IL_7R7A_063

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGGC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R7A_063 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.2931

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7R7A|1|1|G|1961
7R7A|1|1|G|1962
7R7A|1|1|G|1963
7R7A|1|1|C|1964
*
7R7A|1|1|G|2058
7R7A|1|1|C|2080

Current chains

Chain 1

25S rRNA

Nearby chains

Chain p

YTM1 isoform 1