IL_7R7A_064

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R7A_064 not in the Motif Atlas

Geometric match to IL_4V88_391

Geometric discrepancy: 0.2694

The information below is about IL_4V88_391

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7R7A|1|1|C|1965
7R7A|1|1|U|1966
7R7A|1|1|U|1967
7R7A|1|1|G|1968
*
7R7A|1|1|C|2054
7R7A|1|1|U|2055
7R7A|1|1|U|2056
7R7A|1|1|G|2057

Current chains

Chain 1

25S rRNA

Nearby chains

Chain p

YTM1 isoform 1