IL_7R7A_099

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R7A_099 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.3969

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7R7A|1|1|A|3342
7R7A|1|1|G|3343
7R7A|1|1|A|3344
7R7A|1|1|G|3345
*
7R7A|1|1|C|3360
7R7A|1|1|G|3361
7R7A|1|1|A|3362
7R7A|1|1|U|3363

Current chains

Chain 1

25S rRNA

Nearby chains

Chain x

ATP-dependent rRNA helicase SPB4