IL_7RQ8_084

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ8_084 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3427

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

7RQ8|1|1A|G|2124
7RQ8|1|1A|G|2125
7RQ8|1|1A|A|2126
7RQ8|1|1A|G|2127
*
7RQ8|1|1A|C|2161
7RQ8|1|1A|G|2162
7RQ8|1|1A|C|2163
7RQ8|1|1A|C|2164
7RQ8|1|1A|G|2165
7RQ8|1|1A|G|2166
7RQ8|1|1A|U|2167
7RQ8|1|1A|G|2168
7RQ8|1|1A|A|2169
7RQ8|1|1A|A|2170
7RQ8|1|1A|A|2171
7RQ8|1|1A|U|2172
7RQ8|1|1A|A|2173
7RQ8|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA