IL_7RQ8_167

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

7RQ8|1|1a|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ8_167 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.0637

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7RQ8|1|1a|C|1399
7RQ8|1|1a|5MC|1400
7RQ8|1|1a|G|1401
*
7RQ8|1|1a|C|1501
7RQ8|1|1a|A|1502
7RQ8|1|1a|A|1503
7RQ8|1|1a|G|1504

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1e

30S ribosomal protein S5

Chain 1v

mRNA

Chain 1x

Transfer RNA; tRNA