IL_7RQ8_242

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ8_242 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.0941

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7RQ8|1|2A|U|1851
7RQ8|1|2A|C|1852
7RQ8|1|2A|A|1853
7RQ8|1|2A|A|1854
7RQ8|1|2A|G|1855
*
7RQ8|1|2A|C|1887
7RQ8|1|2A|G|1888
7RQ8|1|2A|A|1889
7RQ8|1|2A|A|1890
7RQ8|1|2A|G|1891

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2y

Transfer RNA; tRNA