IL_7RQ8_255

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CCUGUGAAC*GGGAGG

Length

15 nucleotides

Bulged bases

7RQ8|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ8_255 not in the Motif Atlas

Geometric match to IL_6HCT_001

Geometric discrepancy: 0.3915

The information below is about IL_6HCT_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_74205.1

Basepair signature

cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

Number of instances in this motif group

3

Unit IDs

7RQ8|1|2A|C|2128
7RQ8|1|2A|C|2129
7RQ8|1|2A|U|2130
7RQ8|1|2A|G|2131
7RQ8|1|2A|U|2132
7RQ8|1|2A|G|2133
7RQ8|1|2A|A|2134
7RQ8|1|2A|A|2135
7RQ8|1|2A|C|2136
*
7RQ8|1|2A|G|2155
7RQ8|1|2A|G|2156
7RQ8|1|2A|G|2157
7RQ8|1|2A|A|2158
7RQ8|1|2A|G|2159
7RQ8|1|2A|G|2160

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains