IL_7RQ8_314

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

7RQ8|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ8_314 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1131

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

7RQ8|1|2a|G|683
7RQ8|1|2a|A|684
7RQ8|1|2a|G|685
7RQ8|1|2a|U|686
7RQ8|1|2a|A|687
7RQ8|1|2a|G|688
*
7RQ8|1|2a|C|699
7RQ8|1|2a|G|700
7RQ8|1|2a|C|701
7RQ8|1|2a|A|702
7RQ8|1|2a|G|703
7RQ8|1|2a|A|704
7RQ8|1|2a|U|705
7RQ8|1|2a|A|706
7RQ8|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11