IL_7RQ9_268

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

7RQ9|1|2A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ9_268 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0706

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7RQ9|1|2A|U|2636
7RQ9|1|2A|U|2637
7RQ9|1|2A|G|2638
7RQ9|1|2A|A|2639
7RQ9|1|2A|G|2640
*
7RQ9|1|2A|C|2774
7RQ9|1|2A|A|2775
7RQ9|1|2A|A|2776
7RQ9|1|2A|G|2777
7RQ9|1|2A|A|2778
7RQ9|1|2A|U|2779
7RQ9|1|2A|G|2780
7RQ9|1|2A|A|2781
7RQ9|1|2A|G|2782

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13