IL_7RQ9_269

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ9_269 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.0966

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7RQ9|1|2A|C|2652
7RQ9|1|2A|U|2653
7RQ9|1|2A|A|2654
7RQ9|1|2A|G|2655
7RQ9|1|2A|U|2656
7RQ9|1|2A|A|2657
7RQ9|1|2A|C|2658
*
7RQ9|1|2A|G|2663
7RQ9|1|2A|G|2664
7RQ9|1|2A|A|2665
7RQ9|1|2A|C|2666
7RQ9|1|2A|C|2667
7RQ9|1|2A|G|2668

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6