IL_7RQ9_291

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

7RQ9|1|2a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ9_291 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1019

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7RQ9|1|2a|G|148
7RQ9|1|2a|A|149
7RQ9|1|2a|C|150
7RQ9|1|2a|A|151
7RQ9|1|2a|A|152
7RQ9|1|2a|C|153
*
7RQ9|1|2a|G|168
7RQ9|1|2a|C|169
7RQ9|1|2a|U|170
7RQ9|1|2a|A|171
7RQ9|1|2a|A|172
7RQ9|1|2a|U|173
7RQ9|1|2a|C|174

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20