IL_7RQ9_331

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

7RQ9|1|2a|U|1257, 7RQ9|1|2a|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ9_331 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2627

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7RQ9|1|2a|G|1255
7RQ9|1|2a|A|1256
7RQ9|1|2a|U|1257
7RQ9|1|2a|G|1258
*
7RQ9|1|2a|C|1277
7RQ9|1|2a|U|1278
7RQ9|1|2a|A|1279
7RQ9|1|2a|A|1280
7RQ9|1|2a|U|1281
7RQ9|1|2a|C|1282

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z