IL_7RQ9_350

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

7RQ9|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ9_350 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1023

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7RQ9|1|2A|C|844
7RQ9|1|2A|G|845
7RQ9|1|2A|C|846
7RQ9|1|2A|U|847
7RQ9|1|2A|G|848
7RQ9|1|2A|A|849
7RQ9|1|2A|C|850
*
7RQ9|1|2A|G|927
7RQ9|1|2A|G|928
7RQ9|1|2A|U|930
7RQ9|1|2A|G|931
7RQ9|1|2A|G|932
7RQ9|1|2A|A|933
7RQ9|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30