IL_7RQ9_360

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ9_360 not in the Motif Atlas

Homologous match to IL_4LFB_070

Geometric discrepancy: 0.338

The information below is about IL_4LFB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29925.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

7RQ9|1|2a|5MC|1407
7RQ9|1|2a|A|1408
7RQ9|1|2a|C|1409
*
7RQ9|1|2a|G|1491
7RQ9|1|2a|A|1492
7RQ9|1|2a|A|1493
7RQ9|1|2a|G|1494

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2l

30S ribosomal protein S12

Chain 2v

mRNA

Chain 2w

Transfer RNA; tRNA