IL_7RQA_084

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQA_084 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.362

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7RQA|1|1A|G|2110
7RQA|1|1A|C|2111
7RQA|1|1A|G|2112
7RQA|1|1A|U|2113
7RQA|1|1A|A|2114
7RQA|1|1A|G|2115
7RQA|1|1A|G|2116
7RQA|1|1A|A|2117
7RQA|1|1A|U|2118
7RQA|1|1A|A|2119
7RQA|1|1A|G|2120
*
7RQA|1|1A|C|2178
7RQA|1|1A|C|2179

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains