IL_7RQA_212

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGUAAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

7RQA|1|2A|U|1026, 7RQA|1|2A|A|1127, 7RQA|1|2A|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQA_212 not in the Motif Atlas

Geometric match to IL_7RQB_040

Geometric discrepancy: 0.0468

The information below is about IL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

7RQA|1|2A|G|1024
7RQA|1|2A|G|1025
7RQA|1|2A|U|1026
7RQA|1|2A|A|1027
7RQA|1|2A|A|1028
7RQA|1|2A|A|1029
7RQA|1|2A|G|1030
*
7RQA|1|2A|C|1124
7RQA|1|2A|G|1125
7RQA|1|2A|A|1126
7RQA|1|2A|A|1127
7RQA|1|2A|A|1128
7RQA|1|2A|A|1129
7RQA|1|2A|U|1130
7RQA|1|2A|G|1131
7RQA|1|2A|A|1132
7RQA|1|2A|U|1133
7RQA|1|2A|C|1135
7RQA|1|2A|G|1136
7RQA|1|2A|G|1137
7RQA|1|2A|G|1138
7RQA|1|2A|G|1139
7RQA|1|2A|C|1140

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2Q

50S ribosomal protein L16