IL_7RQA_359

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAGAAG*UGGUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQA_359 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3108

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_51313.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7RQA|1|2A|C|1468
7RQA|1|2A|A|1469
7RQA|1|2A|G|1470
7RQA|1|2A|A|1471
7RQA|1|2A|A|1472
7RQA|1|2A|G|1473
*
7RQA|1|2A|U|1518
7RQA|1|2A|G|1519
7RQA|1|2A|G|1520
7RQA|1|2A|U|1523
7RQA|1|2A|G|1524

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains