IL_7RQA_360

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQA_360 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0646

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

7RQA|1|2A|G|1666
7RQA|1|2A|G|1667
7RQA|1|2A|A|1668
7RQA|1|2A|A|1669
7RQA|1|2A|C|1670
7RQA|1|2A|U|1671
7RQA|1|2A|C|1672
7RQA|1|2A|U|1673
7RQA|1|2A|G|1674
*
7RQA|1|2A|C|1990
7RQA|1|2A|U|1991
7RQA|1|2A|G|1992
7RQA|1|2A|U|1993
7RQA|1|2A|C|1994

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14