IL_7RQA_363

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGU*ACCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQA_363 not in the Motif Atlas

Geometric match to IL_7SZU_003

Geometric discrepancy: 0.3366

The information below is about IL_7SZU_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.3

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

12

Unit IDs

7RQA|1|2a|G|657
7RQA|1|2a|G|658
7RQA|1|2a|U|659
*
7RQA|1|2a|A|746
7RQA|1|2a|C|747
7RQA|1|2a|C|748
7RQA|1|2a|C|749

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2o

30S ribosomal protein S15