IL_7RQB_307

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQB_307 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0777

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7RQB|1|2a|G|450
7RQB|1|2a|A|451
7RQB|1|2a|A|452
7RQB|1|2a|A|453
7RQB|1|2a|C|454
7RQB|1|2a|C|455
*
7RQB|1|2a|G|476
7RQB|1|2a|A|477
7RQB|1|2a|C|479
7RQB|1|2a|U|480
7RQB|1|2a|G|481
7RQB|1|2a|A|482
7RQB|1|2a|C|483

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16