IL_7RQB_343

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQB_343 not in the Motif Atlas

Homologous match to IL_5J7L_060

Geometric discrepancy: 0.264

The information below is about IL_5J7L_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQB|1|2a|G|1405
7RQB|1|2a|U|1406
7RQB|1|2a|5MC|1407
7RQB|1|2a|A|1408
7RQB|1|2a|C|1409
*
7RQB|1|2a|G|1491
7RQB|1|2a|A|1492
7RQB|1|2a|A|1493
7RQB|1|2a|G|1494
7RQB|1|2a|U|1495
7RQB|1|2a|C|1496

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2l

30S ribosomal protein S12

Chain 2y

Ribosome-associated inhibitor A