IL_7RQB_350

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQB_350 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0423

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7RQB|1|1A|G|1666
7RQB|1|1A|G|1667
7RQB|1|1A|A|1668
7RQB|1|1A|A|1669
7RQB|1|1A|C|1670
7RQB|1|1A|U|1671
7RQB|1|1A|C|1672
7RQB|1|1A|U|1673
7RQB|1|1A|G|1674
*
7RQB|1|1A|C|1990
7RQB|1|1A|U|1991
7RQB|1|1A|G|1992
7RQB|1|1A|U|1993
7RQB|1|1A|C|1994

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14