IL_7RQC_063

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

7RQC|1|1A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQC_063 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0341

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7RQC|1|1A|G|1526
7RQC|1|1A|G|1527
7RQC|1|1A|A|1528
7RQC|1|1A|A|1528|||A
7RQC|1|1A|G|1529
*
7RQC|1|1A|U|1540
7RQC|1|1A|G|1541
7RQC|1|1A|A|1542
7RQC|1|1A|C|1543
7RQC|1|1A|A|1544
7RQC|1|1A|A|1545
7RQC|1|1A|C|1546

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains