IL_7RQC_128

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQC_128 not in the Motif Atlas

Homologous match to IL_6CZR_125

Geometric discrepancy: 0.1171

The information below is about IL_6CZR_125

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_99460.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

7RQC|1|1a|G|292
7RQC|1|1a|G|293
*
7RQC|1|1a|U|304
7RQC|1|1a|G|305
7RQC|1|1a|G|306
7RQC|1|1a|C|307
7RQC|1|1a|C|308

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16