IL_7RQC_276

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

7RQC|1|2A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQC_276 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0531

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7RQC|1|2A|U|2636
7RQC|1|2A|U|2637
7RQC|1|2A|G|2638
7RQC|1|2A|A|2639
7RQC|1|2A|G|2640
*
7RQC|1|2A|C|2774
7RQC|1|2A|A|2775
7RQC|1|2A|A|2776
7RQC|1|2A|G|2777
7RQC|1|2A|A|2778
7RQC|1|2A|U|2779
7RQC|1|2A|G|2780
7RQC|1|2A|A|2781
7RQC|1|2A|G|2782

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13