IL_7RQD_257

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQD_257 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.3096

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7RQD|1|2A|G|2110
7RQD|1|2A|C|2111
7RQD|1|2A|G|2112
7RQD|1|2A|U|2113
7RQD|1|2A|A|2114
7RQD|1|2A|G|2115
7RQD|1|2A|G|2116
7RQD|1|2A|A|2117
7RQD|1|2A|U|2118
7RQD|1|2A|A|2119
7RQD|1|2A|G|2120
*
7RQD|1|2A|C|2178
7RQD|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains