IL_7RQD_351
3D structure
- PDB id
- 7RQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7RQD_351 not in the Motif Atlas
- Homologous match to IL_5J7L_361
- Geometric discrepancy: 0.0777
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
7RQD|1|1a|G|673
7RQD|1|1a|G|674
7RQD|1|1a|A|675
7RQD|1|1a|A|676
7RQD|1|1a|U|677
*
7RQD|1|1a|G|713
7RQD|1|1a|G|714
7RQD|1|1a|A|715
7RQD|1|1a|A|716
7RQD|1|1a|C|717
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1D
- 50S ribosomal protein L2
- Chain 1f
- 30S ribosomal protein S6
- Chain 1k
- 30S ribosomal protein S11
- Chain 1r
- 30S ribosomal protein S18
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