IL_7RQE_062

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

7RQE|1|1A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQE_062 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.037

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7RQE|1|1A|G|1526
7RQE|1|1A|G|1527
7RQE|1|1A|A|1528
7RQE|1|1A|A|1528|||A
7RQE|1|1A|G|1529
*
7RQE|1|1A|U|1540
7RQE|1|1A|G|1541
7RQE|1|1A|A|1542
7RQE|1|1A|C|1543
7RQE|1|1A|A|1544
7RQE|1|1A|A|1545
7RQE|1|1A|C|1546

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains