IL_7RQE_214

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGUAAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

7RQE|1|2A|U|1026, 7RQE|1|2A|A|1127, 7RQE|1|2A|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQE_214 not in the Motif Atlas

Geometric match to IL_7RQB_040

Geometric discrepancy: 0.054

The information below is about IL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

7RQE|1|2A|G|1024
7RQE|1|2A|G|1025
7RQE|1|2A|U|1026
7RQE|1|2A|A|1027
7RQE|1|2A|A|1028
7RQE|1|2A|A|1029
7RQE|1|2A|G|1030
*
7RQE|1|2A|C|1124
7RQE|1|2A|G|1125
7RQE|1|2A|A|1126
7RQE|1|2A|A|1127
7RQE|1|2A|A|1128
7RQE|1|2A|A|1129
7RQE|1|2A|U|1130
7RQE|1|2A|G|1131
7RQE|1|2A|A|1132
7RQE|1|2A|U|1133
7RQE|1|2A|C|1135
7RQE|1|2A|G|1136
7RQE|1|2A|G|1137
7RQE|1|2A|G|1138
7RQE|1|2A|G|1139
7RQE|1|2A|C|1140

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2Q

50S ribosomal protein L16