IL_7RQE_257

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

7RQE|1|2A|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQE_257 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.337

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7RQE|1|2A|G|2110
7RQE|1|2A|C|2111
7RQE|1|2A|G|2112
7RQE|1|2A|U|2113
7RQE|1|2A|A|2114
7RQE|1|2A|G|2115
7RQE|1|2A|G|2116
7RQE|1|2A|A|2117
7RQE|1|2A|U|2118
7RQE|1|2A|A|2119
7RQE|1|2A|G|2120
*
7RQE|1|2A|C|2178
7RQE|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains