IL_7RQE_258

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQE_258 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.2521

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQE|1|2A|G|2124
7RQE|1|2A|G|2125
7RQE|1|2A|A|2126
7RQE|1|2A|G|2127
*
7RQE|1|2A|C|2161
7RQE|1|2A|G|2162
7RQE|1|2A|C|2163
7RQE|1|2A|C|2164
7RQE|1|2A|G|2165
7RQE|1|2A|G|2166
7RQE|1|2A|U|2167
7RQE|1|2A|G|2168
7RQE|1|2A|A|2169
7RQE|1|2A|A|2170
7RQE|1|2A|A|2171
7RQE|1|2A|U|2172
7RQE|1|2A|A|2173
7RQE|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains