IL_7RR5_023

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_023 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.1313

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7RR5|1|C1|G|725
7RR5|1|C1|G|726
7RR5|1|C1|G|727
7RR5|1|C1|G|728
*
7RR5|1|C1|U|741
7RR5|1|C1|G|742
7RR5|1|C1|C|743
7RR5|1|C1|A|744
7RR5|1|C1|C|745

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18-B

Chain Lb

RPL29 isoform 1