IL_7RR5_051

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GACACCACAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

7RR5|1|C1|C|1196, 7RR5|1|C1|A|1302, 7RR5|1|C1|U|1305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_051 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.0819

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7RR5|1|C1|G|1194
7RR5|1|C1|A|1195
7RR5|1|C1|C|1196
7RR5|1|C1|A|1197
7RR5|1|C1|C|1198
7RR5|1|C1|C|1199
7RR5|1|C1|A|1200
7RR5|1|C1|C|1201
7RR5|1|C1|A|1202
7RR5|1|C1|A|1203
7RR5|1|C1|A|1204
7RR5|1|C1|A|1205
*
7RR5|1|C1|U|1299
7RR5|1|C1|G|1300
7RR5|1|C1|A|1301
7RR5|1|C1|A|1302
7RR5|1|C1|A|1303
7RR5|1|C1|A|1304
7RR5|1|C1|U|1305
7RR5|1|C1|G|1306
7RR5|1|C1|G|1307
7RR5|1|C1|A|1308
7RR5|1|C1|U|1309
7RR5|1|C1|G|1310
7RR5|1|C1|G|1311
7RR5|1|C1|C|1312
7RR5|1|C1|G|1313
7RR5|1|C1|C|1314

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain LB

RPL3 isoform 1

Chain LF

60S ribosomal protein L7-A

Chain LI

RPL10 isoform 1

Chain LO

60S ribosomal protein L16-A

Chain Lf

60S ribosomal protein L33-A

Chain Lm

Ubiquitin-60S ribosomal protein L40