IL_7RR5_072

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_072 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.1456

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7RR5|1|C1|U|1702
7RR5|1|C1|U|1703
7RR5|1|C1|A|1704
7RR5|1|C1|U|1705
7RR5|1|C1|C|1706
7RR5|1|C1|A|1707
*
7RR5|1|C1|U|1737
7RR5|1|C1|C|1738
7RR5|1|C1|U|1739
7RR5|1|C1|U|1740
7RR5|1|C1|A|1741
7RR5|1|C1|U|1742
7RR5|1|C1|G|1743

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34-A