3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
CGUAAC*GGAUAAG
Length
13 nucleotides
Bulged bases
7RR5|1|C1|U|1931
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_078 not in the Motif Atlas
Homologous match to IL_8C3A_084
Geometric discrepancy: 0.1109
The information below is about IL_8C3A_084
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65969.4
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

7RR5|1|C1|C|1918
7RR5|1|C1|G|1919
7RR5|1|C1|U|1920
7RR5|1|C1|A|1921
7RR5|1|C1|A|1922
7RR5|1|C1|C|1923
*
7RR5|1|C1|G|1928
7RR5|1|C1|G|1929
7RR5|1|C1|A|1930
7RR5|1|C1|U|1931
7RR5|1|C1|A|1932
7RR5|1|C1|A|1933
7RR5|1|C1|G|1934

Current chains

Chain C1
25S rRNA

Nearby chains

Chain C2
Small subunit ribosomal RNA; SSU rRNA
Chain LR
60S ribosomal protein L19-A
Chain Ln
60S ribosomal protein L41-A
Chain Lp
60S ribosomal protein L43-A

Coloring options:


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