IL_7RR5_087

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_087 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.153

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7RR5|1|C1|U|2211
7RR5|1|C1|C|2212
7RR5|1|C1|A|2213
7RR5|1|C1|A|2214
7RR5|1|C1|A|2215
7RR5|1|C1|G|2216
7RR5|1|C1|U|2217
*
7RR5|1|C1|A|2228
7RR5|1|C1|A|2229
7RR5|1|C1|C|2230
7RR5|1|C1|C|2231
7RR5|1|C1|A|2232
7RR5|1|C1|A|2233
7RR5|1|C1|G|2234

Current chains

Chain C1

25S rRNA

Nearby chains

Chain L1

60S ribosomal protein L1

Chain Li

60S ribosomal protein L36-A

Chain Lo

60S ribosomal protein L42-A