IL_7RR5_106

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7RR5|1|C1|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_106 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1241

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7RR5|1|C1|G|2828
7RR5|1|C1|U|2829
7RR5|1|C1|G|2830
*
7RR5|1|C1|U|2858
7RR5|1|C1|U|2859
7RR5|1|C1|U|2860
7RR5|1|C1|U|2861
7RR5|1|C1|U|2862

Current chains

Chain C1

25S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain LB

RPL3 isoform 1

Chain LI

RPL10 isoform 1