IL_7RR5_109

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7RR5|1|C1|G|2945, 7RR5|1|C1|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_109 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1641

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

12

Unit IDs

7RR5|1|C1|C|2879
7RR5|1|C1|U|2880
7RR5|1|C1|C|2881
*
7RR5|1|C1|G|2943
7RR5|1|C1|U|2944
7RR5|1|C1|G|2945
7RR5|1|C1|A|2946
7RR5|1|C1|G|2947

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

RPL3 isoform 1

Chain LV

60S ribosomal protein L23-B