IL_7RR5_115

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7RR5|1|C1|A|3142, 7RR5|1|C1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_115 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.1286

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7RR5|1|C1|C|3004
7RR5|1|C1|A|3005
7RR5|1|C1|A|3006
7RR5|1|C1|U|3007
*
7RR5|1|C1|A|3139
7RR5|1|C1|G|3140
7RR5|1|C1|A|3141
7RR5|1|C1|A|3142
7RR5|1|C1|C|3143
7RR5|1|C1|G|3144

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

RPL3 isoform 1

Chain LO

60S ribosomal protein L16-A