IL_7RR5_119

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

7RR5|1|C1|U|3056, 7RR5|1|C1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_119 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1156

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7RR5|1|C1|U|3054
7RR5|1|C1|U|3055
7RR5|1|C1|U|3056
7RR5|1|C1|U|3057
7RR5|1|C1|U|3058
7RR5|1|C1|G|3059
*
7RR5|1|C1|C|3084
7RR5|1|C1|G|3085
7RR5|1|C1|A|3086
7RR5|1|C1|A|3087
7RR5|1|C1|G|3088

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

RPL3 isoform 1

Chain LW

RPL24A isoform 1

Chain Ld

60S ribosomal protein L31-A