IL_7RR5_145

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_145 not in the Motif Atlas

Homologous match to IL_4V88_391

Geometric discrepancy: 0.1357

The information below is about IL_4V88_391

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7RR5|1|C2|G|109
7RR5|1|C2|U|110
7RR5|1|C2|U|111
7RR5|1|C2|A|112
*
7RR5|1|C2|U|302
7RR5|1|C2|U|303
7RR5|1|C2|U|304
7RR5|1|C2|C|305

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SI

RPS8A isoform 1

Chain SL

40S ribosomal protein S11-B