3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
GGAGUAUG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_190 not in the Motif Atlas
Homologous match to IL_4V88_440
Geometric discrepancy: 0.0855
The information below is about IL_4V88_440
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
5

Unit IDs

7RR5|1|C2|G|1111
7RR5|1|C2|G|1112
7RR5|1|C2|A|1113
7RR5|1|C2|G|1114
7RR5|1|C2|U|1115
7RR5|1|C2|A|1116
7RR5|1|C2|U|1117
7RR5|1|C2|G|1118
*
7RR5|1|C2|U|1129
7RR5|1|C2|G|1130
7RR5|1|C2|A|1131
7RR5|1|C2|A|1132
7RR5|1|C2|A|1133
7RR5|1|C2|C|1134

Current chains

Chain C2
18S rRNA

Nearby chains

Chain Ln
60S ribosomal protein L41-A
Chain SX
40S ribosomal protein S23

Coloring options:


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