IL_7RR5_206

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

7RR5|1|C2|A|1346, 7RR5|1|C2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_206 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1541

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7RR5|1|C2|A|1345
7RR5|1|C2|A|1346
7RR5|1|C2|U|1347
7RR5|1|C2|A|1348
*
7RR5|1|C2|U|1377
7RR5|1|C2|U|1378
7RR5|1|C2|C|1379
7RR5|1|C2|U|1380

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16-A

Chain SU

RPS20 isoform 1

Chain Sg

Guanine nucleotide-binding protein subunit beta-like protein