IL_7RR5_213

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7RR5|1|C2|C|1637, 7RR5|1|C2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_213 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1987

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7RR5|1|C2|C|1636
7RR5|1|C2|C|1637
7RR5|1|C2|G|1638
*
7RR5|1|C2|C|1764
7RR5|1|C2|A|1765
7RR5|1|C2|A|1766
7RR5|1|C2|G|1767

Current chains

Chain C2

18S rRNA

Nearby chains

Chain P

Transfer RNA; tRNA

Chain Sa

RPS26B isoform 1

Chain m

mRNA