IL_7RR5_218

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_218 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.1419

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7RR5|1|C2|C|1653
7RR5|1|C2|G|1654
7RR5|1|C2|A|1655
7RR5|1|C2|U|1656
*
7RR5|1|C2|A|1744
7RR5|1|C2|G|1745
7RR5|1|C2|A|1746
7RR5|1|C2|G|1747

Current chains

Chain C2

18S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41-A

Chain SX

40S ribosomal protein S23