IL_7RR5_222

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RR5_222 not in the Motif Atlas

Homologous match to IL_4V88_472

Geometric discrepancy: 0.2273

The information below is about IL_4V88_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7RR5|1|C2|G|1672
7RR5|1|C2|G|1673
7RR5|1|C2|C|1674
*
7RR5|1|C2|G|1727
7RR5|1|C2|A|1728
7RR5|1|C2|C|1729

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LW

RPL24A isoform 1

Chain SG

40S ribosomal protein S6

Chain SI

RPS8A isoform 1