3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
AGGAU*AGAAU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7RR5_224 not in the Motif Atlas
Geometric match to IL_7RQB_075
Geometric discrepancy: 0.1665
The information below is about IL_7RQB_075
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_56467.8
Basepair signature
cWW-tSH-tSH-tHS-cWW
Number of instances in this motif group
29

Unit IDs

7RR5|1|C2|A|1678
7RR5|1|C2|G|1679
7RR5|1|C2|G|1680
7RR5|1|C2|A|1681
7RR5|1|C2|U|1682
*
7RR5|1|C2|A|1719
7RR5|1|C2|G|1720
7RR5|1|C2|A|1721
7RR5|1|C2|A|1722
7RR5|1|C2|U|1723

Current chains

Chain C2
18S rRNA

Nearby chains

Chain LW
RPL24A isoform 1
Chain SG
40S ribosomal protein S6
Chain SI
RPS8A isoform 1

Coloring options:


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