IL_7RYF_014

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYF_014 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.1454

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

7RYF|1|A|U|604
7RYF|1|A|U|605
7RYF|1|A|A|606
7RYF|1|A|A|607
7RYF|1|A|C|608
*
7RYF|1|A|G|616
7RYF|1|A|G|617
7RYF|1|A|G|618
7RYF|1|A|A|619
7RYF|1|A|G|620

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15