IL_7RYF_016

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7RYF|1|A|G|799, 7RYF|1|A|G|803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYF_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1167

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7RYF|1|A|G|672
7RYF|1|A|A|673
7RYF|1|A|A|674
7RYF|1|A|A|675
7RYF|1|A|C|676
*
7RYF|1|A|G|797
7RYF|1|A|U|798
7RYF|1|A|G|799
7RYF|1|A|A|800
7RYF|1|A|U|801
7RYF|1|A|A|802
7RYF|1|A|G|803
7RYF|1|A|C|804

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15