IL_7RYF_049

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAG*CAUGC

Length

9 nucleotides

Bulged bases

7RYF|1|A|U|1557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RYF_049 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2595

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7RYF|1|A|G|1427
7RYF|1|A|A|1428
7RYF|1|A|A|1429
7RYF|1|A|G|1430
*
7RYF|1|A|C|1555
7RYF|1|A|A|1556
7RYF|1|A|U|1557
7RYF|1|A|G|1558
7RYF|1|A|C|1559

Current chains

Chain A

23S ribosomal RNA

Nearby chains